Part:BBa_K1670004:Experience

This experience page is provided so that any user may enter their experience using this part.
Please enter how you used this part and how it worked out.

Characterization of BBa_K1670004-Arizona_State 2016

Authors: Ernesto Luna, Brady Dennison, Cassandra Barrett, Jimmy Xu, Jiaqi Wu, Dr. Karmella Haynes

Our team helped increase characterization of the part BBa_K1670004(EsaI). This part was tested against its ability to induce the part BBa_F2620 by the Canton Lab(MIT). This part outputs PoPS as a Receiver Device combined with LuxR. An induction test on BBa_F2620 had been done by Dr. Barry Canton (2008), but they tested GFP production over various AHL concentrations, while our test was an 8-hour GFP read over time for 2 AHL concentrations (10 and 50%). In addition, the Canton test utilized synthetic AHLs while our test utilized AHLs produced via an E.coli chassis. A visual induction test was also done, plating the Sender alongside a GFP positive control, negative receiver control, and F2620.

As shown below, Esa was able to strongly induce F2620 in this visual induction, as colonies in the top right section did produce GFP. This is the expected result, as Esa produces the same AHL as Lux (3-oxo-C6-HSL) and the Canton Lab showed that the Lux AHL was capable of inducing F2620.

Plate with GFP+(top left), Sender(center), -Receiver(bottom) and F2620(top right)

The figure below compares EsaI at 10% and 50% concentrations alongside the native AHL system LuxI at 10% and 50% concentrations. EsaI is shown to induce F2620 to an even greater degree than LuxI. This may be due to the fact that E. coli has machinery that is able to more efficiently produce the AHL using the Esa synthase. This affirms that F2620 is capable of being induced by EsaI synthesized within BL21(DE3) E. coli, supporting the notion that crosstalk is occurring. This result corroborates the plate induction result.

GFP absorbance from EsaI over time

AHL Disposal Test

The final experiment conducted using this part aimed to determine proper safe disposal procedures for the 3-O-C16-HSL. This AHL molecule is capable of crosstalk with potentially pathogenic strains of bacteria, and proper disposal of these AHLs should be an important biosafety measure taken. S.A. Borchardt had already tested the susceptibility of AHLs to bleach and found that 3-oxo AHLs were easily broken down by bleach while other AHLs were not. Our experiment aimed to test the application of autoclaving on 3-O-C6-HSL, a standard EH&S sanitation protocol. A standard 15 minute Liquid autoclave cycle was used to treat an extracted AHL solution. The figure below indicates that Esa was not completely destroyed via autoclaving. This was NOT the expected result, as the high pressure and temperatures should have deactivated any AHL molecules present.

GFP absorbance from EsaI over time

Conclusion

The results demonstrate that Esa was able to effectively induce F2620 after being extracted. The Esa disposal results were inconsistent, which showed decreased induction when autoclaved, but was not capable of completely destroying the AHLs. The extreme pressure and temperature generated by the autoclave should have been more than enough to remove any threat posed by these AHL samples. This may have been an experimental error, and should be evaluated further in future experiments.

User Reviews

UNIQa54a4573ab652cdc-partinfo-00000000-QINU UNIQa54a4573ab652cdc-partinfo-00000001-QINU